Patrick AMAR

Bioinfo group, LRI, Univ. Paris Sud, CNRS UMR 8623
Synthetic & Systems Biology group, Sys2diag UMR 9005 CNRS, ALCEDIAG

History

Silicell Maker has been developed since 2012. The first published reference can be found in the Proceedings of the aDVANCES IN SYSTEMS AND SYNTHETIC BIOLOGY thematic research school, 2015, pp:63-76.

In the PhD memoir of Marc Bouffard (in french) one can find a complete description of the NetGate (logic gate finder) and NetBuild (boolean formula to metabolic network) plugins.

Download Silicell Maker

    Windows Version (Jun 12, 2017)
    Linux (x86_64) Version (Jun 12, 2017)
    Mac OS X (x86_64) Version (Jun 12, 2017)

Quick overview

Silicell Maker is a modelling editor / simulator for biochemical network design, with a highly intuitive graphical user interface. It uses the SBGN graphical notation, and support many standard file formats (SBML, Metatool, etc.) Models can be exported to be used by various other modelling tools (HSIM, BIOCHAM, Metatool)

Click here to get an HTML version of the on-line user manual.

 

 


Website designed & maintained by Patrick Amar (patrick DOT amar AT lri DOT fr) 312  hits since 11/01/2017